• Sr Bioinformaticist - Information Services…

    Rady Children's Hospital San Diego (San Diego, CA)


    This is a hybrid role with a minimum of two days per week onsite.

    JOB SUMMARY:

    Computational-biologists/bioinformaticists in a large-scale "production" setting to deploy, maintain and evolve the bioinformatics framework for a high-throughput, ultra-rapid turnaround time wholegenome sequencing based clinical setting. Part of a team that'll build the infrastructure ground up using the latest and greatest of the technologies in infrastructure, data storage and analytics, with a strong focus on automation and integration. The environment is highly cross-functional, with a rich medical research heritage and multitude of collaborations with the biotech industry, academic institutions and federal programs.

    MINMUM QUALIFICATIONS:

    Bachelor's Degree

     

    Experience analyzing next-gen sequencing data (Illumina whole genomes or exomes): BCL to annotated variants

     

    Experience working with and understanding of open source NGS tools like bwa, samtools, vcftools, picard, GATK, Freebayes, ANNOVAR, VEP, etc.

     

    Experience with unix/linux operating system and software development using any of Ruby, Python, Perl, Bash

     

    Experience working with HPC scheduling systems such as Moab, TORQUE, LSF, OpenGrid Engine, etc.

    PREFERRED QUALIFICATIONS:

    Master's Degree

     

    Experience in CNV and SV calling

     

    Previous experience working in a CAP/CLIA environment

     

    Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools

     

    The current salary range for this position is $52.95 to $72.81 Rady

     

    Children’s Hospital is committed to compensation that is externally competitive and internally equitable. We demonstrate this commitment by conducting regular market reviews to remain competitive with organizations of similar size in the nonprofit, healthcare sector. The range listed above does not represent the full salary range for the position but is the expected hiring range for qualified candidates. Compensation decisions consider a variety of factors including experience, education, licensure, unique skillsets, organizational need, and internal equity. This posting will remain open from the “date posted” until the hiring manager has determined there is a sufficient applicant pool or until the position is filled.

     

    EOE including disability/vet