"Alerted.org

Duration: 12 months contract

Job Description:

+ The Precision Medicine Pathology team drives the scientific strategy for **translational tissue-based biomarker development & discovery target validation/MOA projects** , leads **pathology** collaborative programs, conducts **histopathological evaluation & analysis of IHC** & **spatial biology technologies** , and provides technical/scientific leadership to **histotechnicians & pathology scientists.**

+ The successful candidate will have advanced knowledge and experience analyzing **spatial transcriptomics** and **proteomics** data generated on the **CosMx SMI and PhenoCycler** Fusion platforms.

Responsibilities:

+ Implementation of different scripts and pipelines for spatial transcriptomics data analysis and analysis of **high-plex PhenoCycler Fusion (CODEX) images.**

+ Independently performing **end-to-end high-plex image analysis** (tissue classification, cell segmentation, detection of marker positivity, cell phenotyping, unsupervised clustering, neighborhood analysis, proximity analysis).

+ Acting as a subject matter resource and training other team members in spatial analysis tasks.

+ Collaborating with **pathologists and digital pathology scientists** to support spatial biology projects.

+ Presenting the results and findings from spatial biology studies to stakeholders.

Experience:

+ **MSc, PhD, or equivalent degree** in biological sciences / computational biology / engineering / computer science / informatics

+ Fluency in **Python and R**

+ Experience in implementing and utilizing open-source scripts and pipelines for **high-plex image analysis**

+ Experience in **quantitative digital pathology analysis platforms** such as **Halo, Visiopharm, QuPath**

+ Close familiarity with **tissue microscopic anatomy and histology (** normal and diseased) is a plus

+ Excellent verbal communication skills are required including the demonstrated ability to effectively and clearly summarize results for **presentation and report generation**

Skills:

+ Fluency in **Python and R**

+ Experience in implementing and utilizing open-source scripts and pipelines for **high-plex image analysis**

+ Experience in **quantitative digital pathology analysis platforms** such as **Halo, Visiopharm, QuPath**

+ Close familiarity with **tissue microscopic anatomy and histology (** normal and diseased) is a plus

Education:

+ **MSc, PhD, or equivalent degree** in biological sciences / computational biology / engineering / computer science / informatics

About US Tech Solutions:

US Tech Solutions is a global staff augmentation firm providing a wide range of talent on-demand and total workforce solutions. To know more about US Tech Solutions, please visit www.ustechsolutions.com (http://www.ustechsolutionsinc.com) .

US Tech Solutions is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, or status as a protected veteran.